Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs4521584 chr6:42608187 T/C 3.4E-8 131 37.7 51.67 20.6 KM Plot
TGCT rs452216 chr17:39340597 G/A 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs452531 chr17:39341158 G/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs452876 chr12:130760245 A/C 8.76E-5 134 48.87 40.57 25.1 KM Plot
TGCT rs453545 chr17:39340430 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4556910 chr19:30342679 A/T 1.92E-6 134 20.6 54.18 37.53 KM Plot
TGCT rs457920 chr21:42794758 A/G 0.000127 134 NA 33.22 42.03 KM Plot
TGCT rs4585313 chr4:37240236 C/T 0 134 0.5 29.8 46.3 KM Plot
TGCT rs4588629 chr5:1798138 A/G 3.74E-7 134 20.6 45.83 42.18 KM Plot
TGCT rs4633929 chr2:121951075 A/G 1.0E-8 134 20.6 60.63 41.27 KM Plot
TGCT rs4671224 chr2:54753991 C/T 5.44E-5 132 45.7 44.05 22.42 KM Plot
TGCT rs4671227 chr2:54790598 A/G 5.65E-5 133 45.7 42.27 22.42 KM Plot
TGCT rs4671229 chr2:54918522 A/T 0.000161 133 45.7 41.97 25.02 KM Plot
TGCT rs4671959 chr2:54796931 C/A 5.65E-5 133 45.7 42.27 22.42 KM Plot
TGCT rs4671962 chr2:54798896 A/T 7.09E-5 130 48.63 44.05 22.42 KM Plot